Neuronvisio¶

What is it¶

NeuronVisio is a GTK2 user interface for NEURON simulator enviroment. NeuronVisio connect with NEURON using the new python NEURON interface.

Features¶

• 3D visualization of the model with the possibility to change it runtime
• Creation of vectors to record any variables present in the section
• Pylab integration to plot directly the result of the simulation
• Exploration of the timecourse of any variable among time using a color coded scale
• the GUI runs in its own thread so it’s possible to use the console (strongly suggested ipython)

Quick overview¶

Quick overview of the 3D capabilites. More [screenshots available](screenshots.html).

Help and development¶

Contents¶

• Install
  • Easy Install
  • Source Code
• Getting Started
  • How does it work
  • How to integrate NeuronVisio with your code
  • NeuronVisio features
  • Plotting the simulation results
• Screenshots
  • Gtk GUI control
  • 3-Dimensions with a simple model
  • 3-Dimensions with a complex model
  • Animation window and pylab graph
• Reference
  • neuronvisio.manager – Manage the map between vectors and sections
  • neuronvisio.visio – 3D Visual operations
  • neuronvisio.controls – Gtk UI module
• Changes in Neuronvisio
  • 0.3.5 - 20 Nov 2009
  • 0.3.4 - 15 Sep 2009
  • 0.3.3 - 3 Sep 2009
  • 0.3.22 - 31 Jul 2009
  • 0.3.21 - 20 Jul 2009
  • 0.3.2 - 20 Jul 2009
  • 0.3.1 - 18 Jul 2009
  • 0.3.0 - 14 Jul 2009
  • 0.2.0 - 6 Jul 2009
  • 0.1.0 - 30 Jun 2009

Indices and tables¶

• Index
• Module Index
• Search Page