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Neuronvisio

What is it

NeuronVisio is a GTK2 user interface for NEURON simulator enviroment. NeuronVisio connect with NEURON using the new python NEURON interface.

Features

  • 3D visualization of the model with the possibility to change it runtime
  • Creation of vectors to record any variables present in the section
  • Pylab integration to plot directly the result of the simulation
  • Exploration of the timecourse of any variable among time using a color coded scale
  • the GUI runs in its own thread so it’s possible to use the console (strongly suggested ipython)

Quick overview

Quick overview of the 3D capabilites. More [screenshots available](screenshots.html).

images/neuronWithSpines.png images/spines_detailed.png

Help and development

Documentation

You can read the documentation online or download the latest manual

MailingList

There is a google group to ask for help or send patches.

Code

  • To install Neuronvisio check the Install
  • To browse the code online go to the github repo
  • To download and install the code from github check the Source Code section
  • To submit a bug use the tracker

Indices and tables